Universal Informatics — M1–M1001

m1-m1001.json is the complete manifest. Each record file contains full native Alpha, Beta, Gamma, geometry, verification and research metadata. This ZIP includes all 1001 records under pilot-v1/. The first 48 retain their approved mathematical content.

For new records, redundant formation interior arrays are represented by endpoints into alpha.residues. For each formation interval, walk clockwise from from_index + 1 to to_index, excluding both endpoints and wrapping modulo P. Read values from alpha.residues. Endpoints, sum and residue are retained.

M9 family: 111 multiples of nine through M999. All four reduced sequence views retain original alignment; Epsilon uses the reference route inside each 24-position block. Native full-circle Epsilon qualification is separate.

14 publications, including four HERO studies, provide shared background context. Modulus-specific WSS and biological significance remain unassessed. Only M9 and M18 have selected native random-shuffle probabilities.

Images are available through each JSON view URL on the Atlas; this data archive does not duplicate image assets. dataset.json and m1-m1001.json are current manifest entry points. m1-m48-archive.json and m1-m48-data.zip retain the previous M1–M48 snapshot.

OXTR transcriptional-regulation supplement — 19 October 2026

oxtr-tfbs-v1/ contains a separate source-linked catalogue, literature records, reference DNA, JASPAR motif templates and existing predictions, ENCODE occupancy clusters and experimental provenance, and ORegAnno annotations. Read its README.txt and catalogue metadata for the bounded reference window and interpretation. CSV users have complete tables and typed metadata without needing JSON. The supplement is shared across the Atlas; no modulus-specific biological comparison has been performed. The original 14-study register is unchanged.

Coordinate experiment — 20 October 2026

oxtr-tfbs-v1/experiment-v1/ contains fixed projections for 128 study observations (2 sequence elements and 126 BrainTF occupancy regions), 255 ENCODE regions and 9,164 JASPAR predictions (score >=400), compared visually with all four M9 P24 Atlas sequences. It includes original intervals, source provenance, mappings, methods, Python/Biopython code and Wolfram checks. JSON and CSV exports carry the same experiment information. This is visual exploration with computational verification; biological association is untested.
