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AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S. · Nucleic acids research · 2022 · Journal publication

Original publication · Original publication · Original publication

Recorded summary

Reference associated with AI-Driven Protein Structure Prediction (AlphaFold).

Recorded limitations

Bibliographic metadata matched; scientific claims await appraisal.

Evidence and provenance

Chapter Trust Factor uses a minimum of three distinct qualifying studies. Publication records retain their own evidence and assessment.

Study design and assessment
design
Journal publication
assessment
Not recorded
trust Factor
scope
Paper
status
unassessed
score
Not recorded
basis
Bibliographic identity checks do not establish study design, blinding or evidential strength.
jadad
status
unassessed
score
Not recorded
evidence
Not recorded
Topics and recorded topic scores
  1. key
    general:imaging-transcriptomics
    title
    Imaging, Transcriptomics and Gene Regulation
    collection
    general
    trust Score
    Not recorded
Citation snapshot and identifiers
id
hsi-a767ad286ab4ab
doi
10.1093/nar/gkab1061
pmid
34791371
citation Snapshot
Not recorded
citations By Collection
general
Not recorded
Complete approved library record
id
hsi-a767ad286ab4ab
aliases
None recorded
source References
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    NPL-211
    record Id
    hsi-a767ad286ab4ab
    source Type
    Journal publication
    title
    AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
    authors
    Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S.
    year
    2022
    journal
    Nucleic acids research
    doi
    10.1093/nar/gkab1061
    pmid
    34791371
    pmcid
    PMC8728224
    patent Number
    Not recorded
    original Assignee
    Not recorded
    original Citation
    Varadi M, Anyango S, Deshpande M et al. (2022). "AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models." Nucleic Acids Research 50(D1):D439–D444. DOI: 10.1093/nar/gkab1061 — 200M+ predicted protein structures; EMBL-EBI partnership; 3M+ researchers across 190+ countries
    original Section
    AI-Driven Protein Structure Prediction (AlphaFold)
    metadata Status
    metadata-matched
    claim Review
    Not independently appraised
    source URL
    https://www.notion.so/3807b9c99c5680599be7d8337c817b15
    publication URL
    https://pubmed.ncbi.nlm.nih.gov/34791371/
    metadata URL
    https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1093%2Fnar%2Fgkab1061%22&format=json&resultType=core&pageSize=4
    corrections
    None recorded
    topic Id
    imaging-transcriptomics
    role
    Focused chapter source
source Type
Journal publication
source Verification
Bibliographic metadata matched; scientific claims await appraisal.
source Collection
Hyperspectral Imaging · patent section 2.4
title
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
journal
Nucleic acids research
neurotransmitters
None recorded
year
2022
authors
Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S.
design
Journal publication
kind
Journal publication
identity Conflict
Not recorded
doi
10.1093/nar/gkab1061
pmid
34791371
urls

https://pubmed.ncbi.nlm.nih.gov/34791371/ · https://doi.org/10.1093/nar/gkab1061 · https://pmc.ncbi.nlm.nih.gov/articles/PMC8728224/

collections

general

categories

Hyperspectral Imaging

targets
None recorded
priority
1
quotes
None recorded
summary
Reference associated with AI-Driven Protein Structure Prediction (AlphaFold).
limitation
Bibliographic metadata matched; scientific claims await appraisal.
citation Count
Not recorded
paper Trust Assessment
scope
Paper
status
unassessed
score
Not recorded
basis
Bibliographic identity checks do not establish study design, blinding or evidential strength.
citations By Collection
general
Not recorded
topics
  1. key
    general:imaging-transcriptomics
    title
    Imaging, Transcriptomics and Gene Regulation
    collection
    general
    trust Score
    Not recorded
journal Key
nucleicacidsresearch
journal Label
Nucleic acids research
chapter Entries
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    general-imaging-transcriptomics-hsi-a767ad286ab4ab
    record Id
    hsi-a767ad286ab4ab
    title
    AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
    journal
    Nucleic acids research
    year
    2022
    authors
    Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S.
    design
    Journal publication
    urls

    https://pubmed.ncbi.nlm.nih.gov/34791371/ · https://doi.org/10.1093/nar/gkab1061 · https://pmc.ncbi.nlm.nih.gov/articles/PMC8728224/

    quotes
    None recorded
    summary
    Reference associated with AI-Driven Protein Structure Prediction (AlphaFold).
    related Versions
    None recorded
    limitation
    Bibliographic metadata matched; scientific claims await appraisal.
    citation Count
    Not recorded
    source Pages
    None recorded
    doi
    10.1093/nar/gkab1061
    pmid
    34791371
    targets
    None recorded
    categories

    Hyperspectral Imaging

    source References
    1. ref
      NPL-211
      record Id
      hsi-a767ad286ab4ab
      source Type
      Journal publication
      title
      AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
      authors
      Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S.
      year
      2022
      journal
      Nucleic acids research
      doi
      10.1093/nar/gkab1061
      pmid
      34791371
      pmcid
      PMC8728224
      patent Number
      Not recorded
      original Assignee
      Not recorded
      original Citation
      Varadi M, Anyango S, Deshpande M et al. (2022). "AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models." Nucleic Acids Research 50(D1):D439–D444. DOI: 10.1093/nar/gkab1061 — 200M+ predicted protein structures; EMBL-EBI partnership; 3M+ researchers across 190+ countries
      original Section
      AI-Driven Protein Structure Prediction (AlphaFold)
      metadata Status
      metadata-matched
      claim Review
      Not independently appraised
      source URL
      https://www.notion.so/3807b9c99c5680599be7d8337c817b15
      publication URL
      https://pubmed.ncbi.nlm.nih.gov/34791371/
      metadata URL
      https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1093%2Fnar%2Fgkab1061%22&format=json&resultType=core&pageSize=4
      corrections
      None recorded
      topic Id
      imaging-transcriptomics
      role
      Focused chapter source
    source Type
    Journal publication
    source Verification
    Bibliographic metadata matched; scientific claims await appraisal.
    collection
    general
    chapter Number
    11
    topic Id
    imaging-transcriptomics
    topic Title
    Imaging, Transcriptomics and Gene Regulation
    trust Score
    Not recorded
    paper Trust Assessment
    scope
    Paper
    status
    unassessed
    score
    Not recorded
    basis
    Bibliographic identity checks do not establish study design, blinding or evidential strength.
jadad
status
unassessed
score
Not recorded
condition Evidence
None recorded
conditions
None recorded
topic Trust Scores
None recorded
full Text
status
not-indexed
retrieval Available
false

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